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ArcFISH

  • Installation
  • Tutorials
  • API Reference
  • Contact
  • GitHub
  • Installation
  • Tutorials
  • API Reference
  • Contact
  • GitHub

Section Navigation

  • Loop and domain calling
  • A/B compartment calling
  • ArcFISH as a command line tool
  • Tutorials

Tutorials#

Jupyter notebook usage#

  • Loop and domain calling
    • Loading FOF_CT-core file
    • Loop calling
    • TAD calling
  • A/B compartment calling
  • Load and preprocess the data
  • A/B compartment calling
  • Computation speed up with dask

Command line usage#

  • ArcFISH as a command line tool
    • Preprocessing
    • Loop calling
    • Domain calling
    • Compartment calling

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Loop and domain calling

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  • Jupyter notebook usage
  • Command line usage

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