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ArcFISH

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  • arcfish.pp
    • arcfish.pp.FOF_CT_Loader
    • arcfish.pp.add_cell_type
    • arcfish.pp.filter_normalize
    • arcfish.pp.joint_filter_normalize
    • arcfish.pp.median_pdist
    • arcfish.pp.pseudo_count
  • arcfish.tl
    • arcfish.tl.LoopTestAbstract
    • arcfish.tl.TwoSampleT
    • arcfish.tl.AxisWiseF
    • arcfish.tl.LoopCaller
    • arcfish.tl.DiffLoop
    • arcfish.tl.overlap
    • arcfish.tl.signal_overlap
    • arcfish.tl.loop_overlap
    • arcfish.tl.all_possible_pairs
    • arcfish.tl.TADCaller
    • arcfish.tl.DiffRegion
    • arcfish.tl.ABCaller
  • arcfish.wr
    • arcfish.wr.caller_wrapper
  • arcfish.pl
    • arcfish.pl.cast_to_distmat
    • arcfish.pl.pairwise_heatmap
    • arcfish.pl.triangle_heatmap
    • arcfish.pl.background_model
    • arcfish.pl.compare_loops
    • arcfish.pl.domain_boundary
    • arcfish.pl.cpmt_bars
  • API Reference
  • arcfish.pl
  • arcfish.pl.domain_boundary

arcfish.pl.domain_boundary#

arcfish.pl.domain_boundary(adata: AnnData, caller: TADCaller, ax: Axes | None = None, **kwargs)#

Plot domain boundaries on median pairwise distance heatmap.

Parameters:
  • adata (AnnData) – Object created by arcfish.pp.FOF_CT_Loader.create_adata().

  • caller (TADCaller) – Instantiated TAD caller object.

  • ax (plt.Axes | None, optional) – Plot ax, by default None.

  • **kwargs (dict) – Additional keyword arguments passed to pairwise_heatmap().

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