Skip to main content
Ctrl+K

ArcFISH

  • Installation
  • Tutorials
  • API Reference
  • Contact
  • GitHub
  • Installation
  • Tutorials
  • API Reference
  • Contact
  • GitHub

Section Navigation

  • arcfish.pp
    • arcfish.pp.FOF_CT_Loader
    • arcfish.pp.add_cell_type
    • arcfish.pp.filter_normalize
    • arcfish.pp.joint_filter_normalize
    • arcfish.pp.median_pdist
    • arcfish.pp.pseudo_count
  • arcfish.tl
    • arcfish.tl.LoopTestAbstract
    • arcfish.tl.TwoSampleT
    • arcfish.tl.AxisWiseF
    • arcfish.tl.LoopCaller
    • arcfish.tl.DiffLoop
    • arcfish.tl.overlap
    • arcfish.tl.signal_overlap
    • arcfish.tl.loop_overlap
    • arcfish.tl.all_possible_pairs
    • arcfish.tl.TADCaller
    • arcfish.tl.DiffRegion
    • arcfish.tl.ABCaller
  • arcfish.wr
    • arcfish.wr.caller_wrapper
  • arcfish.pl
    • arcfish.pl.cast_to_distmat
    • arcfish.pl.pairwise_heatmap
    • arcfish.pl.triangle_heatmap
    • arcfish.pl.background_model
    • arcfish.pl.compare_loops
    • arcfish.pl.domain_boundary
    • arcfish.pl.cpmt_bars
  • API Reference
  • arcfish.pl

arcfish.pl#

pl.cast_to_distmat

Cast the input array to a p by p matrix.

pl.pairwise_heatmap

Single heatmap or two heatmaps in the upper and the lower triangle regions.

pl.triangle_heatmap

Plot a heatmap in the upper right triangle of a 2D matrix.

pl.background_model

Cartoon visualization of background model.

pl.compare_loops

Plot two sets of loops together.

pl.domain_boundary

Plot domain boundaries on median pairwise distance heatmap.

pl.cpmt_bars

Add A/B compartment assignments to a heatmap.

previous

arcfish.wr.caller_wrapper

next

arcfish.pl.cast_to_distmat

© Copyright 2024, Hongyu Yu.

Built with the PyData Sphinx Theme 0.16.1.