arcfish.pp.median_pdist

arcfish.pp.median_pdist(adata: AnnData, inplace: bool = True) → None | ndarray

Compute median pairwise distance matrix.

Add med_dist to adata.varp.

Parameters:

• adata (AnnData) – Object created by FOF_CT_Loader.create_adata().

• inplace (bool, optional) – Whether to add the median pairwise distance matrix to adata or return as an array, by default True.

Returns:

Return a p by p median pairwise distance matrix if inplace is False; otherwise return None.

Return type:

None | np.ndarray